MRIQC: individual T1w report

Summary

  • BIDS filename: sub-6039_ses-2_T1w.
  • Date and time: 2024-04-17, 20:24.
  • MRIQC version: 0.16.1.
  • Workflow details:
    • Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)
Background noise

Other

cjv0.37536823535542846
cnr3.6403001479969075
efc0.5615018680410038
fber5426.483703252178
fwhmavg3.32371
fwhmx3.30792
fwhmy3.50536
fwhmz3.15785
icvscsf0.17734324892992454
icvsgm0.43785373915274994
icvswm0.3848030119173255
inumed1.2753586769104004
inurange0.23274236917495728
qi10.0008211809615776331
qi20.007665969279349891
rpvecsf30.439262521896538
rpvegm13.74156871745932
rpvewm18.672489353414488
sizex176
sizey256
sizez256
snrcsf1.6847188105236304
snrgm8.631790488001478
snrtotal8.787912130260382
snrwm16.047227092256037
snrdcsf38.45958266077662
snrdgm93.29250016380016
snrdtotal92.16675119793963
snrdwm144.74817076924217
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk1609.4975387045997
summarybgmad4.525795724340592
summarybgmean9.280818952672618
summarybgmedian9.048786953091621
summarybgn2432958.0
summarybgp052.9980920627713203
summarybgp9521.204687498509884
summarybgstdv8.816332843888677
summarycsfk45.886491317339804
summarycsfmad102.03244824964281
summarycsfmean291.3413177617367
summarycsfmedian265.68546752631664
summarycsfn6776.0
summarycsfp05131.23466620221734
summarycsfp95499.0460515394807
summarycsfstdv157.69151519742317
summarygmk-0.07817721403457023
summarygmmad75.24135391716234
summarygmmean644.2525592127213
summarygmmedian644.4807719662786
summarygmn19945.0
summarygmp05521.406367251277
summarygmp95766.8465367391706
summarygmstdv74.66175368946412
summarywmk0.39949901065190385
summarywmmad58.18880217009333
summarywmmean1000.2321590908442
summarywmmedian999.9454690814018
summarywmn193041.0
summarywmp05897.192677475512
summarywmp951103.8429867476225
summarywmstdv62.31250254933411
tpmoverlapcsf0.16575875878334045
tpmoverlapgm0.43055352568626404
tpmoverlapwm0.5006704330444336
wm2max0.4694681885652864
AcquisitionDuration318.417
AcquisitionMatrixPE256
AcquisitionNumber1
AcquisitionTime15:32:20.600000
BaseResolution256
BodyPartExaminedBRAIN
CoilCombinationMethodAdaptive Combine
CoilStringHeadNeck_64
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20220720
Dcm2bidsVersion2.1.7
DeviceSerialNumber67034
DwellTime6.1e-06
EchoTime0.0024
FlipAngle9
ImageCommentsProject:earlypsychosis
ImageOrientationPatientDICOM[0.0118068, 0.99853, 0.052901, -0.0596929, 0.0535142, -0.996781]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'NONE']
ImageTypeText['ORIGINAL', 'PRIMARY', 'M', 'NORM', 'DIS2D']
ImagingFrequency123.262
InPlanePhaseEncodingDirectionDICOMROW
InstitutionAddressFairbanks 710,Chicago ,Chicago,US,60611
InstitutionNameNU Tuna
InversionTime0.9
MRAcquisitionType3D
MTStateTrue
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNameMAGNETOM Prisma Fit
MatrixCoilModeGRAPPA
ModalityMR
NonlinearGradientCorrectionTrue
ParallelAcquisitionTechniqueGRAPPA
ParallelReductionFactorInPlane2
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseResolution1
PixelBandwidth320
ProtocolNameMPRAGE_SAG_1mm_iPAT2
PulseSequenceDetails%SiemensSeq%\tfl
PulseSequenceName*tfl3d1_16ns
ReceiveCoilActiveElementsHC1-7;NC1,2
ReceiveCoilNameHeadNeck_64
ReconMatrixPE256
RefLinesPE24
RepetitionTime2.3
ScanOptionsIR
ScanningSequenceGR\IR
SequenceVariantSK\SP\MP
SeriesDescriptionMPRAGE_SAG_1mm_iPAT2
SeriesNumber10
ShimSetting[2609, 5288, -7457, -28, 163, -627, 41, -327]
SliceThickness1
SoftwareVersionssyngo MR XA30
StationNameMRC35427
TxRefAmp243.532
md5sum380ee8b0969a1faede52be9aebde9722
softwaremriqc
version0.16.1
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For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.